RnoINT0168302 @ rn6
Intron Retention
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212360432-212362633:+
Coord C1 exon
chr1:212360432-212360556
Coord A exon
chr1:212360557-212362513
Coord C2 exon
chr1:212362514-212362633
Length
1957 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CACTGCTCTGTTCTCTGTAGCCC
3' ss Score
8.56
Exon sequences
Seq C1 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGGTTTGATAAGCCCAAGACAAACAGAGG
Seq A exon
GTACGTGAGGGACCCAGTTGTGACTGTCCCTAGTCTTAAGCCTGGGAACAGACACTGTGGCCAAACCTTAGTTTTTATATACAGGTAGCTGAAACGCTGAGGACAGTGAGTTAGTATGCTTGGGTTATACATTGATGGAGTCAGGAGGGCACTGAGAGCAGAGGGTGGGGTGCTAGCAGATGCTTGGGCTGGTCTGGTGTCTTTCATGGCCCTCTGATGCTACCAGCAGGGCAATGGGGGCTGTCTCAAGTGTGTGTGCTCTTCACATGTCTCCCGTGGGCCCCCCTAGGGCTTTTGTGTTTTTTTCTTTCCACCACTTACTTTTATAAACTTATCAACAAAGCTGTCTGTTAGCATGACTGTTTAGACTGCCCTGGGGAAAAGAATTCCTGGAAGAACTTTGAGAGGAATGCTCTTTTGCTTCCTTTAAAAAAAAAAAAAAAACGATCCCTTTCCATGAACTCCCATAATCATTAGTCATTGCATTGACTGGGGTTGGGGACACAGCTCATTCTGTGAAGTGCATATAAGTTTGAGGTTCAATCCCTAGCACCTACCAAAAAAGCCAAGTGTGGTGTACACATGTGGTGCTAGCAGCAAGAAAGTGAAGACAGGTTTCCTGGAGTTAGGCCAGCTAGCTTAGCCTAATCTGTGAGCTCTGGGTTCCAGTGAGAGACCTCGTCTCTACAAGGTAGATGGCTCCTAGAAAATGAGTCCTGAGGTTGGCTTCTGTCCTGTTCATATAAACATACACCATACACAGTATACACACCTAAGCATACACACAGAATAAATAAAGTTTGCATGAATTGGAGTCTATTTTCTTCAAACAGTGCACCTTTCCATGTAAAATAATTGCAAAGCCCATTTTATTGTGGGAATGCTTCCTGAGAATCTGAGTCTTCAATACTTTTTGACTTCTACAGAGCTGGATCAGCTCATTGGTAGTAGTGGCAAGAATCTGTGTAATCTAGTTAGTTCTAGTAAATCTCTCCCTCATGGAAAGACATTTGGGCACTGGGATATAACTCAGGAGCAGAGTTTGATTCCCAATATCCGCCTCAGATGGCTCATAACTGCTTGTAATTTCAATTGGATCCCTCCAAGGGATCCAGTGCCTTTTTTTTTTTTTAAATGAGAGAAGAAGAATAGAAGGGGGGATAAGTAAAAGAGGCCAGTCATGGGCACATAGAGGGAAGGGGGAAGGGGAAGAGAGCATGAAAGCAGAGAATTGAACAAAAAGAGTGATCCAGTGCTTTTTACCTCTAGGCATACACACGTGTGGCACCCAGAAGCAACACATACACACACACACACACACACACACACACACACACACACACACACACATGCACATCAATACAAAAATGTTTAAAATCTTGAAGAAAAGTCCTAGTCAGGGCTGAGTGTGGTGGTACATGCCTTTAATCTCAGTAGTTGGAAAGCAGAGACAAGGCAAATCTCAGTTTAGAGGCCAGCCTGGTCTACATACCATGTTTTTCACCCTTTTGGGGGGTGGGGGAGTTAAGGGTAGGGGAGATGTCTCTCTGTGAGAGCCCTGGCTCACCTGGAACTCACTTCGTAGACCTAGCTAGTCTTTAGAACCCAAAGAGAGCACCCATCTCTCCCTTCCTAGTGCTAGGATTAAAGGCATACACTTGTACCTGGCCACAGCTGTCTTAGAAAGGGGGAGAGATGAGGACCATTATACTTAAATTTATAAGTTATCAGACTTAGTTATATAAACACGCAACCATTGCCATGGAGCCTTCTTCTCTTTCCATTAGGAACATTTCATTTTAACAGTAAATGGTGCCAAAATAGTAAAAAACAAAAACAAACAAACAAACAAACAAACAAAACCCCAACATTTTTGCAGGGAAAAAAATGGTGTCTTCCTTGGAAGCTTCATACTGGAAGCCGGTAGAAGTGTTGCTCACTGCTCTGTTCTCTGTAG
Seq C2 exon
CCCAGCCATGCCAGCTGCTGCAGACACAGCAGCCAGAGCCCTGAGAGATGACAGCGATGCCATGGAGGTCTGCTTGGAACCTGCTGCCCCACCTCCCTGCAGAAGGACCTACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272:ENSRNOT00000046314:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGAAAGCTGCCCAGAG
R:
CTGTAGGTCCTTCTGCAGGGA
Band lengths:
230-2187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]