HsaINT0187454 @ hg19
Intron Retention
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135123668-135125345:+
Coord C1 exon
chr10:135123668-135123792
Coord A exon
chr10:135123793-135125219
Coord C2 exon
chr10:135125220-135125345
Length
1427 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCACTGCTCTCTCCCCGCAGCCC
3' ss Score
13.42
Exon sequences
Seq C1 exon
TATCAGTGCTTGGTAGAAGGCTGCACAGAGAAGTTCAAGACCAGCAGAGACCGGAAGGATCACATGGTGAGGATGCACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAGCAGAAG
Seq A exon
GTAGGGAGCCGCCAGGCTCAGCACGTGTCTGCTTTTGATTTTAGGAAAAGGTTTCCAACTAGCCGGAATGCATAGACGGTCAGACTTATTAAGCACTTGTGTGTCACCTAATGGGGTGTTCACCTGCAGGTACCTGAAGCCCTGGCAACACAGCTACAGGTGGTTGTGCCAGCGGCCACCCTGCCGAAGGGAGGCTGGAGGGGAGCCCCTGGCTGCCCAGCTCTGTGCCGGTGGAGGCAGCAGAGGGGGTGTGGGAATGAGCGGGCGCAGCGCCTCCGCACTCACACCCCTCTGGGCCATGCCTGTACCTCCTGCAGCAGTCGGCCGTGGTCATCCGCACTCACACCCCTCGGGGCCGTGTCTGTACCTCCTGCAGCCGTCGGCCGTGCTCACACATCATGCAGCCCTGGCTTTCCTTTTGTCCTGGTTGGTTGTGCGCATATGAACTTGATGACAAAGCTGTTGATTAACATGTTCCTGCCTAGAGTGCACTCTGGGAAATACTTCCAGGAACAATCTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGACACCCAGGCTGGAGTGTAGTGGTGTGATGTAGGTTCACTGCAACCTCCACTTCTCAGGCTCAAGCGATTCTCCCACTTCAGCCTCCTAAAGTGCTAGGACTACCAACACGCATCGCCGCACTCGGCAAAATTTTCTATTTTTTGTAGAGACAGGGTCTTGCTATGTTGCCCAGTCTGGTCGTGAACTCCTGGGCTCAAGCCGTCCATCTGCCTCAGCCTCCCAAAGTGCTGAGATTGTAGGTATGAGCTACCATGTCCAGCCGGAACAATTTTTAAATTGTGTTATATTTCTTCTTTTTTTAACTGATGAGGTGAACTTTCATAATCATCTACAATTTTATTGATCAGAGTTTTTCAGACTCTACATTTTCTCAAGTAGTAATTTGCTCTTTAAAATAAAAGAACTGGGAGAACCCACTGCAATGTGGGAGGCTTTACAAAGACTTACGTGTAAAGTAATTGTCTCCTTTCCGAGGGATCATTTTAAGGAGAAAAACCGTGCAATGCTGGATTAAGACATTCGTATTATGGAAGAGACTAGTTTATAGTCTCTGGTTAACTTTAGCAAATTTCTCACACTCATAAAAAGACCCGTGGCACCGTTGGCACCATAAAAATACTATTTTCAAAAAAAAGTATGATTGTTACAGTTAAGTTTATAAGATGCAGACTCTATTATATAAACAATGGCCTTGCTGTAATCATTCTCCTTTTCCCAGTATCTTAAACCACACTATAAAATCAGACTATGCCAAAATAGTAAGAAAATATGCTACTTACAGGGAAATCCAGTTTCTTTCTTGCATGTTCATTTCTGGGGAACACAGGGGCTGTGGGAGCCGTGCAGGGCAGTTACTCACTGCTCTCTCCCCGCAG
Seq C2 exon
CCCAGCCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAGGTGAGAGGCGGATCTACAGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-ZNF511:NM_145806:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGCTTGGTAGAAGGCTG
R:
TGTCTGTAGATCCGCCTCTCA
Band lengths:
246-1673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)