GgaALTD1026310-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8905064-8907091:+
Coord C1 exon
chr6:8905064-8905182
Coord A exon
NA
Coord C2 exon
chr6:8906912-8907091
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GTCACGTTTTGTTTCTGCAGTGG
3' ss Score
7.51
Exon sequences
Seq C1 exon
TGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
Seq A exon
NA
Seq C2 exon
TGGTGCCAAGCATGTGAGCTGTCCCACAGATCATGACGGGAGTGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533-4-10,5-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGTAGAAGGCTGTGTGG
R:
CTCCATGTTCTCACTGGGCAC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]