HsaALTD0007458-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135123674-135125345:+
Coord C1 exon
chr10:135123674-135123733
Coord A exon
chr10:135123734-135123792
Coord C2 exon
chr10:135125220-135125345
Length
59 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCACTGCTCTCTCCCCGCAGCCC
3' ss Score
13.42
Exon sequences
Seq C1 exon
TGCTTGGTAGAAGGCTGCACAGAGAAGTTCAAGACCAGCAGAGACCGGAAGGATCACATG
Seq A exon
GTGAGGATGCACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAGCAGAAG
Seq C2 exon
CCCAGCCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAGGTGAGAGGCGGATCTACAGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-3-5,4-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGCAGAGACCGGAAG
R:
TGTAGATCCGCCTCTCACCTG
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)