MmuALTD1007785-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:28907988-28908398:-
Coord C1 exon
chr14:28908288-28908398
Coord A exon
NA
Coord C2 exon
chr14:28907988-28908068
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GCCTTAACTACAGTCAACATAAT
3' ss Score
-11.57
Exon sequences
Seq C1 exon
GTCCTTCGTCATCCAGCAAATCCCGAGTAGCAATCTGTTCATGGTGGTGGTGGACAGTAGCTGTCTCTGTGAGTCCGTGGCTCCTATAACCATGGCACCCATTGAAATCAG
Seq A exon
NA
Seq C2 exon
AATGAATCCCTTAAGTGTGAACGGTTAAAGGCTCAGAAGATCAGACGACGTCCAGAATCCTGCCACGGCTTCCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-73-77,74-77-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTCCTATAACCATGGC
R:
AGGATTCTGGACGTCGTCTGA
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types