RnoALTD0004992-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:4874414-4874813:-
Coord C1 exon
chr16:4874703-4874813
Coord A exon
NA
Coord C2 exon
chr16:4874414-4874494
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GCCTTAACTACAGTCAACATAAT
3' ss Score
-11.57
Exon sequences
Seq C1 exon
GTCCTTTGTCATCCAGCAAATCCCAAGTAGCAATCTGTTCATGGTGGTGGTGGACAGTAGCTGTCTCTGTGAGTCTGTGGCTCCTATCACCATGGCACCCATTGAAATCAG
Seq A exon
NA
Seq C2 exon
AATGAATCCCTTAAGTGTGAACGGTTAAAGGCTCAGAAGATCAGACGACGTCCGGAATCCTGCCACGGCTTCCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-63-68,64-68-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTGAGTCTGTGGCTCC
R:
ATTCCGGACGTCGTCTGATCT
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]