Special

MmuEX0001486 @ mm9

Exon Skipping

Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127287574-127291055:+
Coord C1 exon
chr3:127287574-127287712
Coord A exon
chr3:127288937-127289121
Coord C2 exon
chr3:127290859-127291055
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTGTTTTTTTGGTAGAGC
3' ss Score
6.17
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGATAAATAATTCTGATCTGTGCTTCCCAAATGGGCAGAAAATAATATCAGCTTATCTCCCACAAAGGCAAGTTCACATACCTGCTGTTTTCCAGTCTCCTGCTCACTATAGGCAGGTCTTTACAGCTTCCATCATAG
Seq A exon
AGCATCTGAATATATTGCTGTTTGAATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGACAATGAGAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAGCTTGTCATGGTTAAAAAAGAAGGTCCAAATAAG
Seq C2 exon
GGCCGTCTCTTTTATACATGTGATAAGTCAAAAGATAATCAATGTAAATTTTTCAAATGGCTTGAGGAAGTGACTCCAGGACAGTTACCACAGAATACGTCTCAATCCACCATGGTTTTTAATGATATTAAGAGTATTGGCTCATATTTAAGAAGTCAAAAGGTACCAGTCTATGAAGAATGCCAGCTTTTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'18-12,'18-10,19-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.242 C2=0.015
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF068397=zf-GRF=PU(44.4=32.3)

							
C2:
PF068397=zf-GRF=PD(51.1=34.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044432





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044432f4769A, ENSMUSP00000044432f4770A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:112585541-112585725 
ALTERNATIVE
HsaEX0010984
(ZGRF1)
Human
(hg19)
chr4:113506697-113506881 
HIGH PSI
HsaEX0010984
(C4orf21)
Rat
(rn6)
chr2:231911132-231911316 
HIGH PSI
RnoEX0101898
(Zgrf1)
Cow
(bosTau6)
chr6:14202486-14202670 
HIGH PSI
BtaEX6030032
(ZGRF1)
Chicken
(galGal4)
chr4:56717310-56717494 
Chicken
(galGal3)
chr4:58675803-58675987 
HIGH PSI
GgaEX6035139
(C4orf21)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCTGTTTTCCAGTCTCCTGC

				
R: 
GCTGGCATTCTTCATAGACTGGT

				
Band lengths: 
243-428

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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