RnoEX0101898 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231909765-231913119:+
Coord C1 exon
chr2:231909765-231909903
Coord A exon
chr2:231911132-231911316
Coord C2 exon
chr2:231912923-231913119
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGTAGAGC
3' ss Score
10.51
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAATAAATAATTCTGATCTATGCTTCCCAAATGGGCAGAAAATACTATCGGCTTACCTTCCTCAAAGGCAAGTTCACATACCAGCTGTTTTCCAGTCTCCTGCTCACTATCGGCAGATCTTTACGTCTTCCATCATCG
Seq A exon
AGCATCTGAATATATTGTTGTTTGGATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGATGATGAAAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAACTTGTCATGGTTAAAAAAGAAGGACCAAATAAG
Seq C2 exon
GGCCGTCTATTTTACACATGTGATAAGCCAAAAGGTAATCAATGTAAATTTTTCAAATGGCTTGAGGATGTGACTCCAGAACAGTTATCACAGAATGAGTCTCAGCCCAACATGATTTTTAATGATATTAAGAGTATTGGCTCGTATTTAAGAAGTCAGAAGATAGCAGTCTATGAAGAATGCCAGCTTTTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'20-14,'20-13,21-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.226 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF068397=zf-GRF=PU(44.4=32.3)
C2:
PF068397=zf-GRF=PD(51.1=34.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTGCTCACTATCGGC
R:
CTCAGCAAAAGCTGGCATTCT
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]