GgaEX6035139 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58675107-58676648:+
Coord C1 exon
chr4:58675107-58675245
Coord A exon
chr4:58675803-58675987
Coord C2 exon
chr4:58676458-58676648
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTTTCTACCTCAAGAAC
3' ss Score
6.18
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GACATAACAGTTTCTGAGTTGTCTTTTCCTAATGCAGATAAAGTAAAACATGCTAGTCTTCCTAAAAGAAAGATTGCCATACCAACTGAGTTTCAGTCTCACGTTCACTACAGACAGGTTTTTAAAGCTGCTTTGACAG
Seq A exon
AACATTTAAACATAATGCTTTTCGAGTTGTCACAAAGATTACACAGCGCTCTTTTGAAAGTGGATATATCATCTTACACTTCACTGGAAGATGAGCAAAGCGAGAGCAAAGAAAGCTGCGTTCCAGTCTGTGATCACATGCGTCCTGCTAAGGTTCTTGTGGTTAAAAAAGAAGGTCAAAACAAG
Seq C2 exon
GGCCGTCTGTTCTATGCCTGTGATGCCCCAAGAGCTGAGCGGTGCTCATTTTTCAAGTGGATAGAAGAAGTGAATCCTTCACAAATAAAAAAATTCAGACCAAGTGTAGTGCTTCATGATTTAAGAAGTATTGGGGCGTACCTCCGAAATGAAAAGATTTTTGTCTTTGATGGATGCCAGCTTTTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF068397=zf-GRF=PU(44.4=32.3)
C2:
PF068397=zf-GRF=PD(51.1=35.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATACCAACTGAGTTTCA
R:
AGCTGGCATCCATCAAAGACA
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]