MmuEX0001486 @ mm10
Exon Skipping
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127584656-127588137:+
Coord C1 exon
chr3:127584656-127584794
Coord A exon
chr3:127586019-127586203
Coord C2 exon
chr3:127587941-127588137
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTGTTTTTTTGGTAGAGC
3' ss Score
6.17
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGATAAATAATTCTGATCTGTGCTTCCCAAATGGGCAGAAAATAATATCAGCTTATCTCCCACAAAGGCAAGTTCACATACCTGCTGTTTTCCAGTCTCCTGCTCACTATAGGCAGGTCTTTACAGCTTCCATCATAG
Seq A exon
AGCATCTGAATATATTGCTGTTTGAATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGACAATGAGAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAGCTTGTCATGGTTAAAAAAGAAGGTCCAAATAAG
Seq C2 exon
GGCCGTCTCTTTTATACATGTGATAAGTCAAAAGATAATCAATGTAAATTTTTCAAATGGCTTGAGGAAGTGACTCCAGGACAGTTACCACAGAATACGTCTCAATCCACCATGGTTTTTAATGATATTAAGAGTATTGGCTCATATTTAAGAAGTCAAAAGGTACCAGTCTATGAAGAATGCCAGCTTTTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'28-18,'28-16,29-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.242 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF068397=zf-GRF=PU(44.4=32.3)
C2:
PF068397=zf-GRF=PD(51.1=34.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTTTCCAGTCTCCTGC
R:
GCTGGCATTCTTCATAGACTGGT
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types