MmuEX0001499 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127305316-127311550:+
Coord C1 exon
chr3:127305316-127305475
Coord A exon
chr3:127309287-127309364
Coord C2 exon
chr3:127311403-127311550
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTGTTTTCTTTAAGGCT
3' ss Score
9.59
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGTTTTTGGAGCAGGCAAAAGCTATTTGCTGGCTGTGGTGATTCTGTTCTTGGTAGAGCTGTTTGAAAAGTGTGATTCTGGAACAGTTGGCAATGCAAGGCCATGGAAAGTCCTCGTTTCTTCTTCCACTAACGTAGCTGTTGACAGAGTGCTTCTTGG
Seq A exon
GCTTCTCAGTCTTGGATTTGAAAAGTTCATCAGGGTTGGAAGTGTTAGGAAGATCGCCAAGCCAGTTTTACCCTACAG
Seq C2 exon
CTTGCATGCTGGCTCAGACAATGAAAGTGAACAATTGAAGGAACTCAATGCACTGTTGAAGGAAGAACTGACTCCTATTGAAAGAGTTTATGTCAGAAAAAGTATCGAGCAGCATAAGCTGGGAACCAACAGAGTCCTGCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(22.6=100)
A:
PF130861=AAA_11=FE(11.1=100)
C2:
PF130861=AAA_11=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTGGAGCAGGCAAAAGC
R:
ATTGTCTGAGCCAGCATGCAA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: