GgaEX6035136 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58682315-58684228:+
Coord C1 exon
chr4:58682315-58682474
Coord A exon
chr4:58683166-58683243
Coord C2 exon
chr4:58684081-58684228
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTTTTTCTTTGAAGTCT
3' ss Score
6.63
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTGTTTTTGGAGCTGGAAAGAGCTTTTTGCTGTCTGTTGTGATCTTGTTCCTGGTCCAGCTCTTTGAAAGCAGTGAAGCTAAGGAGGGTGCAGAGCTAGCTCCATGGAAACTTCTGATTGCTTCTTCTACTAATGTTGCTGTTGACAGGATATTGCTGTG
Seq A exon
TCTACTTGATCTTGGATTTGAGGATTTTATCAGAGTGGGAAGTATTAGGAAAATCACCAAAGCAATTCTTCCCTATAG
Seq C2 exon
CTTACATGCTGGCTCAGGAAATGAAAATGAACAGTTAAAAGAACTTCTTGCTCTCATGAAAGAAGATTTAGCTCCAGCTGAAAAAATGTATGTAAGGAAGAGTATTGAGCGGCATAAACTGGGGACCAATAAAACTGCATTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'10-13,'10-12,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(22.8=100)
A:
PF130861=AAA_11=FE(11.2=100)
C2:
PF130861=AAA_11=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTGGAGCTGGAAAGAGC
R:
TCATTTCCTGAGCCAGCATGT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]