BtaEX6030027 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14216281-14220355:+
Coord C1 exon
chr6:14216281-14216440
Coord A exon
chr6:14219930-14220007
Coord C2 exon
chr6:14220208-14220355
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGTTTTCTTTAAAGGCT
3' ss Score
9.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCGTTTTCGGAGCAGGAAAGAGTTACTTGCTAGCTGTGGTGATTTTGTTTTTTGTGCAACTATTTGAAAAATGTGAAGCTCTTACAGTTGGAAATGCAAGACCGTGGAAACTTCTGATTTCTTCTTCTACTAATGTAGCTGTTGACAGAGTGCTTCTTGG
Seq A exon
GCTTCTTAGTCTTGGATTTGAAAAGTTTGTCAGAGTTGGGAGTGTCAGAAAGATTGCCAAGCCAGTTTTACCTTACAG
Seq C2 exon
TTTGTATGCTGGCTCAGAAAATGAAAATGAGCAATTAAAGGAACTGCATGCACTCATGAAGGAAGACTTGACTCCTGTGGAAAGAGTCTACGTGAGGAAAAGTATTGAGCAGCATAAACTGGGGACCAATAAAACCCTGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(22.6=100)
A:
PF130861=AAA_11=FE(11.1=100)
C2:
PF130861=AAA_11=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGCTGTTGACAGAGTGCT
R:
GCAGGGTTTTATTGGTCCCCA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]