RnoEX6011490 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231927321-231932768:+
Coord C1 exon
chr2:231927321-231927480
Coord A exon
chr2:231932149-231932226
Coord C2 exon
chr2:231932621-231932768
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTGTTTTTTTAAAGGCT
3' ss Score
9.69
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGTTTTTGGAGCAGGCAAAAGCTACTTGCTGGCTGTGGTGATTCTGTTCTTGGTAGAGCTGTTTGAAAAGTGTGATTCTGAAGCAGTTGGCAGGGCAAGGCCATGGAAACTCCTCATTTCTTCTTCCACTAACGTAGCTGTTGACAGAGTGCTTCTTGG
Seq A exon
GCTTCTCAGTCTTGGATTTGAAAAGTTCATCCGAGTCGGGAGTGTTAGGAAGATTGCCAAGCCAGTTTTACCTTACAG
Seq C2 exon
CTTACATGCTAGCTCAGACAATGAAAGCGAACAATTAAAGGAACTCCACGCACTGATGAGGGAAGAACTGACTCCAATAGAAAGAGTTTATGTCAGGAAAAGTATTGAGCAGCATAAACTGGGGACCAACAGAGTCCTGCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'31-24,'31-23,32-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(22.6=100)
A:
PF130861=AAA_11=FE(11.1=100)
C2:
PF130861=AAA_11=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGCTGTTGACAGAGTGC
R:
TAGCAGGACTCTGTTGGTCCC
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]