MmuEX0001706 @ mm10
Exon Skipping
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35355508-35364789:-
Coord C1 exon
chr2:35364754-35364789
Coord A exon
chr2:35362320-35362367
Coord C2 exon
chr2:35355508-35355645
Length
48 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTCTTTGTTCCTAGGAA
3' ss Score
9.61
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AACAAAGGATCACCTACAGAAGATGTATGCCTGCTG
Seq A exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
Seq C2 exon
AAAACGTCCTGATGTTATAGCAACAACTGGTTGGCTCGCTCCAGTCTTATGGGAAGGAACTTACAACAGAGAAGTTCTAGAACAATATTATAAGAGACTGAACATTACCATAGGCTTGGCTGTCTTCGCTACTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.9=100)
A:
PF034148=Glyco_transf_6=FE(5.1=100)
C2:
PF034148=Glyco_transf_6=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGATGTATGCCTGCTG
R:
GAAGACAGCCAAGCCTATGGT
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types