HsaEX6063918 @ hg19
Exon Skipping
Gene
ENSG00000204007 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:23671]
Coordinates
chr9:138517915-138531039:-
Coord C1 exon
chr9:138530963-138531039
Coord A exon
chr9:138523277-138523324
Coord C2 exon
chr9:138517915-138518052
Length
48 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTCTTTGTATCCAGGAA
3' ss Score
8.94
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGAGAATGAATTCTAAAAGAATGCTGTTATTGGTTTTATTTGCTTTTTCACTGATGTTGGTTGAGCGTTATTTCAG
Seq A exon
GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG
Seq C2 exon
AAAACGCCCTGATGTTATAACGAAAACAGACTGGCTCGCTCCTGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTACAGAAGGCGGAATATCACTGTGGGCCTGGCCGTCTTTGCTACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204007-'1-4,'1-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(3.4=37.5)
A:
PF034148=Glyco_transf_6=FE(6.1=100)
C2:
PF034148=Glyco_transf_6=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGATGTTGGTTGAGCGT
R:
CAGGCCCACAGTGATATTCCG
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)