BtaEX6047070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020249 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23671]
Coordinates
chr11:103318761-103322037:-
Coord C1 exon
chr11:103322025-103322037
Coord A exon
chr11:103319612-103319659
Coord C2 exon
chr11:103318761-103318898
Length
48 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCCCTTCACATCCAGGAA
3' ss Score
8.1
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCTTTGTTGTTT
Seq A exon
GAAAAATCAAGAAGAAGAACTTGAGCTCTCAGACTGGTTCAAGCCCAG
Seq C2 exon
AGGACGCCCCGATGTGATCACGACCACGAGCTGGCTTGCTCCCGTTGTCTGGGAAGGCACTTTCAGCAGAAAGATGCTGGAAAAACACTACAGAAGGCAGAATTTCACAACGGGCTTGGCCGTCTTTGCTACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020249-'5-4,'5-3,7-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(1.3=100)
A:
PF034148=Glyco_transf_6=FE(5.5=100)
C2:
PF034148=Glyco_transf_6=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]