HsaEX6063918 @ hg38
Exon Skipping
Gene
ENSG00000204007 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23671]
Coordinates
chr9:135626069-135639193:-
Coord C1 exon
chr9:135639117-135639193
Coord A exon
chr9:135631431-135631478
Coord C2 exon
chr9:135626069-135626206
Length
48 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTCTTTGTATCCAGGAA
3' ss Score
8.94
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGAGAATGAATTCTAAAAGAATGCTGTTATTGGTTTTATTTGCTTTTTCACTGATGTTGGTTGAGCGTTATTTCAG
Seq A exon
GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG
Seq C2 exon
AAAACGCCCTGATGTTATAACGAAAACAGACTGGCTCGCTCCTGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTACAGAAGGCGGAATATCACTGTGGGCCTGGCCGTCTTTGCTACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204007_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(15.4=50.0)
A:
PF034148=Glyco_transf_6=FE(20.5=100)
C2:
PF034148=Glyco_transf_6=FE(17.6=100)
Main Skipping Isoform:
ENST00000371763fB16402
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGATGTTGGTTGAGCGT
R:
CAGGCCCACAGTGATATTCCG
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains