MmuEX0020611 @ mm9
Exon Skipping
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25650664-25669724:-
Coord C1 exon
chr2:25669639-25669724
Coord A exon
chr2:25666528-25666575
Coord C2 exon
chr2:25650664-25650801
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCTGATGCTCTTTGTACCAGGAA
3' ss Score
7.9
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAAGGAATGAAGGCTAAAAGGAGGATTTTATTACAATTACTGACTTTCTGCCTTTTCCTGCTGCTGCTGGCAAAGATCCACTTCAG
Seq A exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
Seq C2 exon
GAGACGCCTGGATGTCATCACGACCACAGACTGGCTGGCCCCCATCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGACATATTTCAGGAAGCAGAACATCACCGTGGGTTTGGCTGTGTTTGCTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(2.4=25.9)
A:
PF034148=Glyco_transf_6=FE(5.5=100)
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGCAAAGATCCACTT
R:
CCAAACCCACGGTGATGTTCT
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: