MmuEX0020611 @ mm10
Exon Skipping
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25795144-25814204:-
Coord C1 exon
chr2:25814119-25814204
Coord A exon
chr2:25811008-25811055
Coord C2 exon
chr2:25795144-25795281
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCTGATGCTCTTTGTACCAGGAA
3' ss Score
7.9
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAAGGAATGAAGGCTAAAAGGAGGATTTTATTACAATTACTGACTTTCTGCCTTTTCCTGCTGCTGCTGGCAAAGATCCACTTCAG
Seq A exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
Seq C2 exon
GAGACGCCTGGATGTCATCACGACCACAGACTGGCTGGCCCCCATCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGACATATTTCAGGAAGCAGAACATCACCGTGGGTTTGGCTGTGTTTGCTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(2.4=25.9)
A:
PF034148=Glyco_transf_6=FE(5.5=100)
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGCAAAGATCCACTT
R:
CCAAACCCACGGTGATGTTCT
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types