RnoEX0038810 @ rn6
Exon Skipping
Gene
ENSRNOG00000027900 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:RGD Symbol;Acc:1311348]
Coordinates
chr3:3256900-3264101:-
Coord C1 exon
chr3:3264016-3264101
Coord A exon
chr3:3260541-3260588
Coord C2 exon
chr3:3256900-3257037
Length
48 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTGCTCTCTGTACAGGAA
3' ss Score
9.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGGAATGAAGGCCAAAGGGAGGATTTTATTGCTAACTTCCTGCCTTTTTCTGCTGCTGCTGCTGCTGGCTAAGATCCACTTGAG
Seq A exon
GAACCACCAGGAAGAGGAACTTCCGCTCTCAGACTGGTTTGACCCCAG
Seq C2 exon
GAGACGCTTGGATGTTATCACGACCACAGACTGGCTGGCCCCTGTCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGAAATATTACCATAAGCAGAACATCACCATGGGCTTGACTGTGTTTGCTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027900_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(2.1=22.2)
A:
PF034148=Glyco_transf_6=FE(5.5=100)
C2:
PF034148=Glyco_transf_6=FE(15.9=100)
Main Skipping Isoform:
ENSRNOT00000034538fB6038
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGGCTAAGATCCAC
R:
GCCCATGGTGATGTTCTGCTT
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]