RnoEX0038378 @ rn6
Exon Skipping
Gene
ENSRNOG00000042373 | Ggta1l1
Description
glycoprotein, alpha-galactosyltransferase 1-like 1 [Source:RGD Symbol;Acc:1565200]
Coordinates
chr3:14557129-14570053:-
Coord C1 exon
chr3:14570018-14570053
Coord A exon
chr3:14563939-14563986
Coord C2 exon
chr3:14557129-14557266
Length
48 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTCTCTGTACCTAGGAG
3' ss Score
9.04
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AACAAAGGATCACCTACAGAAGATGTACACCTGCTG
Seq A exon
GAGAGATCATCTGGAAGAACCTCAGCTCGAGTCTTGGTTTAATCCAAA
Seq C2 exon
AAAACGTCCTGATGTTATAGCAACAACTGGTTGGCTCGCTCCAGTCTTATGGGAAGGAACTTATGACAGAGAAGTTCTAGAACAATATTATAAGAGACTGAACATCACCGTAGGCTTGGCTGTCTTTGCTACTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042373-'1-4,'1-3,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.9=100)
A:
PF034148=Glyco_transf_6=FE(5.2=100)
C2:
PF034148=Glyco_transf_6=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACAGAAGATGTACACCTGCT
R:
GCCAAGCCTACGGTGATGTTC
Band lengths:
145-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]