MmuEX0002059 @ mm10
Exon Skipping
Gene
ENSMUSG00000054672 | 5830411N06Rik
Description
RIKEN cDNA 5830411N06 gene [Source:MGI Symbol;Acc:MGI:2443685]
Coordinates
chr7:140248821-140294973:+
Coord C1 exon
chr7:140248821-140249129
Coord A exon
chr7:140273992-140274133
Coord C2 exon
chr7:140294659-140294973
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGTGTGGCACCGCTCTGCAGTGG
3' ss Score
2.91
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTACCACACTACAAATGGGGCTAGTTGATGGTGGCAGTCCTTGTGCTGGGACTGCACAGGCCACTGGGGCTTCCAATTTTGCCCTGAGATGTGACTTGCATGAGAAGGAGGCTGGCGTTGTCTGCAGACAGTTGGAATGTGGCACTGCTCTGCAATGGTCCAGAGCCCACGATGGAACTAACGGGAACCAGGAGCAGAAGTACCTTACATGCCAGGGAACAGAGACCAACATTTTACAATGCCTGATCAATGTGAACGTCCTGGAGCAATGTGACCTTCTGACCTACACCCAGGTTGTATGCACAG
Seq A exon
TGGTCCAAAACTCACCAGGGAAGTCAAGAACAGAAATTCGTGTCTTGCCAAGGAACAGAGGCTGACATTTTCTACTGCAAGATCAATGTGAACTTTGCAGAGCAGTGCGACCTTCAATCTTACACCCAGGTGGTGTGCACAG
Seq C2 exon
GTCACGTGGAAGCCCGGCTGCTAGGTGGTGTACACCCCTGTGAAGGACGCCTAGAGGTTCTTAGAGGACTTACCTGGGGCACTGTCTGCCATGATGACCTGGACCTGCCCATGGCCCACGTGGTTTGTAGGGAGCTGGGGTGTGGCACTGCTGTATCCATACTCGGGAGTTCCCACTTTGGCTATGGATCAGGGCCTTTGTGGACAGAGGCCTTTCGCTGTATGGGCAACGAATCACTGCTGTTCCATTGTCTGAGGGAACCTGGACACCAGTGTGGCCATGATCAGGATGCTGCACTAATCTGCTCAGGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054672_MULTIEX1-4/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.4)
A:
NO
C2:
PF0053013=SRCR=WD(100=90.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGACCTACACCCAGG
R:
CCATACAGCGAAAGGCCTCTG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types