MmuEX0002956 @ mm9
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127509270-127517361:+
Coord C1 exon
chr7:127509270-127509420
Coord A exon
chr7:127512650-127512748
Coord C2 exon
chr7:127517208-127517361
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTCATACCTGTAGGTT
3' ss Score
11.21
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGTTGGAAGCCACCTAGTCATGGTGAAGGAACCTTACTGTGACATTGCTGAAATCTCAAAACTGATTCATTCCTATGTCCCAACAGCCACCCTGGAGACTAATGTTGGAAATGAGTTATCTTTTATTCTACCCAAAGAATATACACACAG
Seq A exon
GTTTGAAGCTCTCTTTACTGCTCTGGAAGAGAACCAAGAAAATCTTGGCATTTCTAGCTTTGGTGTGTCTATCACTACCATGGAAGAAGTCTTCCTTAA
Seq C2 exon
GGTCAGTAACCTGGAAGACTCAAAAACAGATATCGAAGCTACCCAGTCGCCCTCGGTAGGAAGCAAAGGGAACAAGAATGGGGATGTTGAAAGCAGCGGGAGAGTAGGCTTTCCCACCCAGAGTGAAGATCAGAACATTGTGTTTAACACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'18-17,'18-16,19-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCACCCTGGAGACTAA
R:
CTCTCCCGCTGCTTTCAACAT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: