MmuEX0002957 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120396936-120401879:+
Coord C1 exon
chr7:120396936-120397130
Coord A exon
chr7:120400583-120400770
Coord C2 exon
chr7:120401709-120401879
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACAGCAATTATTGTAACTAGGTC
3' ss Score
3.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATATACTTTAAGTCTCCACTAATTCTGGCTGTGAAAAATATCTCCCTTGCTATCCAAGAGAGGGCGTGCTTTGGGTTACTTGGATTCAATGGAGCAGGTAAAACAACTACTTTTCAAATTTTGACTGGAGAAAATATTCCTACCGCCGGGGATGTGTTCATTGATGGCATTAGCCTCACCAAGAACATCGTAAAG
Seq A exon
GTCAGGTCAAAAATTGGCTATTGTCCTCAATTTGATGCTTTGCTGGAATACATGACTGGCTGGGAAATAATGATCATGTATGCAAGAATATGGGGAATCTCAGAGCATCAGATTCAGCCCTACGTGAAAAAGTACTTGAATTCTTTGGACCTGGAGTCTCATGCCAACAGTCTTATCAGCACCTACAG
Seq C2 exon
TGAAGGAAACAAACGTAGGCTGAGCACTGCCATTGCCACGATGGGAAAGCCCTCAGTTATCTTCCTGGATGAACCATCAACTGGCATGGACCCAAGAGCTAGGCGCCTTCTCTGGGACACAGTGATAAAGATTCGTGAAAGTGGAAAGGCCATCATTATAACATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'28-30,'28-29,29-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTATCCAAGAGAGGGCGT
R:
TTGGGTCCATGCCAGTTGATG
Band lengths:
244-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types