MmuEX0003003 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79460353-79460900:+
Coord C1 exon
chr10:79460353-79460425
Coord A exon
chr10:79460514-79460607
Coord C2 exon
chr10:79460759-79460900
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCTACCCATTCTCTCCCCAGATC
3' ss Score
12.04
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
AGTCATCATGGCCTTAGGCACACAGCTGATGCTTCTGCTGTGGAAAAATTACACCTATCGACGGAGACAACCG
Seq A exon
ATCCAACTACTAGTGGAGTTGCTTTGGCCCCTCTTCCTCTTCTTCATCCTAGTGGCTGTCCGTCACTCCCACCCCCCTCTGGAGCATCACGAAT
Seq C2 exon
GCCACTTTCCAAACAAGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAACTTTAAGGATTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTTCTGCTGTGGAA
R:
TTACTCAGGACCCCAGGCTTC
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: