GgaEX1005405 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2833894-2834381:-
Coord C1 exon
chr28:2834316-2834381
Coord A exon
chr28:2834137-2834230
Coord C2 exon
chr28:2833894-2834035
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCAGCTGCGGTGTCCCCCAGGTG
3' ss Score
7.77
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGGCTGCGGGGACGCAGCTGCAGCTGCTGCTCTGGAAGAACCTCACCTACCGCCGGCGGCAGCGG
Seq A exon
GTGCAGTTGGCCATCGAGCTGCTGTGGCCGCTCTTCCTCTTCCTCGTGCTGGTGGCGGTGCGGCGCTCCCACCCGCCCTTCCAGCAGCACCAGT
Seq C2 exon
GCCATTTCCCCAACAAGGCGTTGCCGTCGGCCGGGACGCTGCCTTGGCTGCAGGGCATCCTCTGCAATGTGCGCAACCCCTGCTTCCAGCAGCCCACCCCCGGAGAGACCCCCGGCACAGTGGGCAACTTCGGAGGCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTGGAAGAACCTCAC
R:
CTCCGAAGTTGCCCACTGTG
Band lengths:
175-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]