GgaEX7011361 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2833562-2834230:-
Coord C1 exon
chr28:2834137-2834230
Coord A exon
chr28:2833894-2834035
Coord C2 exon
chr28:2833562-2833823
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTCTCTCCCCCTCAGGCC
3' ss Score
12.29
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
GTGCAGTTGGCCATCGAGCTGCTGTGGCCGCTCTTCCTCTTCCTCGTGCTGGTGGCGGTGCGGCGCTCCCACCCGCCCTTCCAGCAGCACCAGT
Seq A exon
GCCATTTCCCCAACAAGGCGTTGCCGTCGGCCGGGACGCTGCCTTGGCTGCAGGGCATCCTCTGCAATGTGCGCAACCCCTGCTTCCAGCAGCCCACCCCCGGAGAGACCCCCGGCACAGTGGGCAACTTCGGAGGCTCCAT
Seq C2 exon
CCTGTCCCGCCTGCTGGCCGATGTCCGCCAGGCCCTGCACCGTGCTGATGGATGGCAGCTCCTGCACCACCTCGCCCACCTCCTGCCTGCACTGCGGGGCCGCACCGCGTCGATCTCATCCCGGCTGCTGCGGGACGATACCTTCACACGCCTCCTCCGCACCAACGCCTCGCTGCTGCCCGTGCTGCACCAGGCACTGCTGGAGGGGCTCAGCCCGCGTGATGTGAGTGTCCATGGTGCAGCCGACCTCCCACCACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCATCGAGCTGCTG
R:
GAGGCGTGTGAAGGTATCGTC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]