DreEX6090542 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5642020-5644469:+
Coord C1 exon
chr11:5642020-5642113
Coord A exon
chr11:5644116-5644257
Coord C2 exon
chr11:5644342-5644469
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTTATGTTTTAGGTC
3' ss Score
14.13
5' ss Seq
CATGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
GTCCAACTTGTTGTTGAACTTCTATGGCCACTCTTCCTCTTCCTCATCCTCATTGCTGTCCGCCAATCACACCCACCGTACAAACAGAGCCAGT
Seq A exon
GTCATTTTCCTAACAAGGCGCTTCCTTCGGCTGGCACACTAGCATGGATTCAGGGCATTATATGCAATGTCAACAACCCCTGTTTTCATCAGCCTACAGCAGGGGAAACACCCGGGCTCGTGAGCAACTTCGACAACTCCAT
Seq C2 exon
ACTTTCTCGACTTTTAGTCGATATGAGGACCGTCCTGACAATCAGTGGCAACCGAACAACCTTCTCTGGTCTTCAGGACCTGTCAAAGACAATCCAAAGACTCGGGGAAAGACCAGATGCCTGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGTTGAACTTCTATGGCCAC
R:
CAGGCATCTGGTCTTTCCCC
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]