GgaEX1005315 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54615891-54620669:-
Coord C1 exon
chrZ:54620576-54620669
Coord A exon
chrZ:54616777-54616918
Coord C2 exon
chrZ:54615891-54616012
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTATTGTGTTTTGGTTTTAGGTC
3' ss Score
11.47
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTCCAGCTGCTGATCGAAGTTGCTTGGCCTCTGTTTATCTTCTTCATCCTGATCTCTGTAAGACTTTCATATCCGCCCTACGAACAGCATGAAT
Seq A exon
GTCACTTCCCAAACAAAGCTATGCCCTCAGCAGGAACATTGCCCTGGATACAGGGGATCATCTGCAATGCCAACAACCCTTGTTTCCGCTACCCAACACCAGGGGAATCTCCTGGTATTGTTGGAAACTTCAATGCGTCCAT
Seq C2 exon
AGTTTCCCGCCTCTTTTCAGATGCCAAGAGGTTACTCTTGTACAGCCAACAGGACACAAGCATAAAGGATGTCCAGAAGGTCTTGGCAAAACTGCGGAAACTGGGAAACTCCTCTGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'7-9,'7-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCTGATCGAAGTTGCT
R:
AGCCAGAGGAGTTTCCCAGTT
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]