DreEX6033546 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51930612-51934590:+
Coord C1 exon
chr1:51930612-51930705
Coord A exon
chr1:51933728-51933869
Coord C2 exon
chr1:51934472-51934590
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTCCTGTTTCCCAGGCC
3' ss Score
9.97
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTCAGCTGCTGGTCGAGATCATATGGCCACTTTTCATCTTTTTCATCTTGATATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAAT
Seq A exon
GCCATTTTCCCAATAAGGCTATGCCCTCTGCAGGGACTTTACCGTGGGTTCAGGGCATCATCTGCAATGCCAACAACCCCTGCTTTCGCTACCCGACTCCAGGAGAGACGCCCGGGGTTGTGGGCAACTTCAATGACTCCAT
Seq C2 exon
CATCTCCCGACTGTTCACCGATGCCAAGAAAATTCTCCTCTACAGCCAACAAGACAAGAGCTTCGAAGGTTTCAAAGGACTCGTTCGAGCCTTGAGAAAACTGCAGAGAAACACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTGCTGGTCGAGATCA
R:
TCAGTGTTTCTCTGCAGTTTTCTCA
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]