BtaEX6035666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96364591-96373357:-
Coord C1 exon
chr8:96373264-96373357
Coord A exon
chr8:96366349-96366490
Coord C2 exon
chr8:96364591-96364709
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTCAATTTCAACAGGCC
3' ss Score
9.15
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGTCAACTGTTTCTTGAAGTGGCCTGGCCTCTATTCATCTTCCTGATCCTGATCTCCGTGCGGCTGAGCTATCCACCCTATGAACAACATGAAT
Seq A exon
GCCACTTTCCAAACAAAGCCATGCCTTCTGCAGGAACACTTCCTTGGGTTCAGGGGATTATCTGTAACGCCAATAACCCCTGTTTCCGTTATCCAACTCCTGGTGAGGCTCCGGGAGTTGTTGGAAACTTTAACAAGTCCAT
Seq C2 exon
TGTGTCTCGCCTGTTCTCAGACGCTCGGCGGCTTCTCTTGTACAGCCACAGAGACACCAGCATGAAGGACATACGCAAAGTTTTGAAGACGTTATACCAGATCGAGCGTTTCAGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGTTTCTTGAAGTGGCCT
R:
GTGAGCTGAAACGCTCGATCT
Band lengths:
211-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]