GgaEX1005315 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53669684-53674985:-
Coord C1 exon
chrZ:53674892-53674985
Coord A exon
chrZ:53670570-53670711
Coord C2 exon
chrZ:53669684-53669805
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTATTGTGTTTTGGTTTTAGGTC
3' ss Score
11.47
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTCCAGCTGCTGATCGAAGTTGCTTGGCCTCTGTTTATCTTCTTCATCCTGATCTCTGTAAGACTTTCATATCCGCCCTACGAACAGCATGAAT
Seq A exon
GTCACTTCCCAAACAAAGCTATGCCCTCAGCAGGAACATTGCCCTGGATACAGGGGATCATCTGCAATGCCAACAACCCTTGTTTCCGCTACCCAACACCAGGGGAATCTCCTGGTATTGTTGGAAACTTCAATGCGTCCAT
Seq C2 exon
AGTTTCCCGCCTCTTTTCAGATGCCAAGAGGTTACTCTTGTACAGCCAACAGGACACAAGCATAAAGGATGTCCAGAAGGTCTTGGCAAAACTGCGGAAACTGGGAAACTCCTCTGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCTGATCGAAGTTGCT
R:
AGCCAGAGGAGTTTCCCAGTT
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]