RnoEX0004744 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69951194-69956147:-
Coord C1 exon
chr5:69956054-69956147
Coord A exon
chr5:69952345-69952486
Coord C2 exon
chr5:69951194-69951312
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCGATTTCAACAGGTC
3' ss Score
11.22
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGTCAGCTGTTACTGGAAGTGGCCTGGCCTCTCTTTATCTTCCTGATCCTGATTTCTGTCCGCCTGAGCTACCCACCCTATGAACAACATGAGT
Seq A exon
GTCACTTTCCAAATAAAGCCATGCCTTCTGCAGGAACCCTTCCCTGGGTCCAGGGGATTATCTGTAATGCCAATAACCCTTGCTTCCGTTATCCAACTCCAGGCGAGGCTCCCGGTGTTGTTGGAAACTTTAACAAGTCCAT
Seq C2 exon
TGTGTCCCGCCTATTCTCAGATGCTCAACGGATTCTTTTGTACAGCCAAAAGGACACCAGCATTAGGGACATGCACAAGGTCCTGAGAACATTACAGCAGATCAAGCATCCCAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGTTACTGGAAGTGGC
R:
TGAGTTGGGATGCTTGATCTGC
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]