RnoEX6030618 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12760522-12761106:-
Coord C1 exon
chr7:12761013-12761106
Coord A exon
chr7:12760722-12760863
Coord C2 exon
chr7:12760522-12760634
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAGGTGTCTCCCCGCTACAGGCC
3' ss Score
7.52
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATCCAACTAGTAGTGGAGTTACTGTGGCCCCTCTTCCTCTTCTTCATCCTAGTGGCCGTCCGTCACTCACACCCCCCACTGGAGCACCACGAAT
Seq A exon
GCCACTTTCCAAACAAGCCACTACCATCAGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAATAACTCCTGCTTCCAACACCCAACGCCTGGAGAGAAGCCTGGCGTCCTGAGCAACTTTAAGGATTCCTT
Seq C2 exon
GATCTCGAGGCTCCTTGCCGATGCTCACACAGTGCTGGGGGGCCACAGCACCCAGGACATGCTGGCTGCCCTGGGGAAACTGATCCCCGTGCTCAGGGCTGTTGGGAGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGTAGTGGAGTTACTGTGGCC
R:
CTCCGCTCCCAACAGCCC
Band lengths:
202-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]