BtaEX6040238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45165859-45166466:+
Coord C1 exon
chr7:45165859-45165952
Coord A exon
chr7:45166129-45166270
Coord C2 exon
chr7:45166348-45166466
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACACCTGGTGTCCCTGCAGGTC
3' ss Score
11.1
5' ss Seq
CCTGTAAAC
5' ss Score
-4.45
Exon sequences
Seq C1 exon
ATCCAACTCTTGGTGGAGTTGTTGTGGCCGCTCTTTCTCTTCTTCATCCTGGTGGCCGTTCGCCATTCCCACCCCCCACTCGAGCAGCATGAAT
Seq A exon
GTCATTTTCCCAACAAGCCGCTGCCCTCAGCAGGCACCATCCCTTGGCTCCAGGGCCTCATCTGCAATGTGAACAACACCTGCTTCCCGTGGCAAACCCCTGGCGAGGAGCCTGGCGTCCTCAGCAACTTCAAGGACTCCCT
Seq C2 exon
GGTTTCGCGGCTCCTGGCAGATGCTCGCACTGTTTTGGGGGGCCCCAGTGCCCATAGGATGCTAGCTAGCCTGAGAAAGCTGATGCCCATTCTGAAGGCTGCACACACAGCCCGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'1-3,'1-1,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGTGGAGTTGTTGTGGC
R:
CTCGGGCTGTGTGTGCAG
Band lengths:
203-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]