RnoEX6030617 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12760722-12761268:-
Coord C1 exon
chr7:12761196-12761268
Coord A exon
chr7:12761013-12761106
Coord C2 exon
chr7:12760722-12760863
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTACACATTCTCTCCCCAGATC
3' ss Score
11.09
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
AGTCATCATGGCTTTCTGCACACAGTTGATGCTCCTACTGTGGAAAAATTACACATATCGACGGAGACAACCG
Seq A exon
ATCCAACTAGTAGTGGAGTTACTGTGGCCCCTCTTCCTCTTCTTCATCCTAGTGGCCGTCCGTCACTCACACCCCCCACTGGAGCACCACGAAT
Seq C2 exon
GCCACTTTCCAAACAAGCCACTACCATCAGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAATAACTCCTGCTTCCAACACCCAACGCCTGGAGAGAAGCCTGGCGTCCTGAGCAACTTTAAGGATTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATGGCTTTCTGCACACA
R:
GTTGGGTGTTGGAAGCAGGAG
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]