Special

MmuEX0005124 @ mm9

Exon Skipping

Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5520081-5530798:+
Coord C1 exon
chr11:5520081-5520150
Coord A exon
chr11:5528330-5529409
Coord C2 exon
chr11:5530705-5530798
Length
1080 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTATGACTTCTAAGGAC
3' ss Score
6.53
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTTCGCCAAACCTGATGTTAGTGACCCAGAGCCCACAGCAAGAAAGGATGAATATAAGCTTGATACAAAG
Seq A exon
GACGAGGATAGGTTAGAGAGGCATCTTCTGGCACCCAAGGCGTCCCAGCATCAAGCCAAGCAGACGAGCCCTCCACCTGTACAACTTCAAGAAAGATCTCAGGGGCCAGAGATGGACACGGCTTCTGATGAGGAAGATACGTCTGGACTTTCAAAATCCGCTAAGGGCCAAATACTTGGGGGAAAGTTGACATTAGGAGAAAACCCGGAGGGTAAAGAAACTGTACAGTGTGTCATTAACAAGCCAACGCAGAAGGGTGACGAGATCTATGAAGATGTTAACGCTAATGTTTACCTCAAGGAAGAGCGACCACCTGATGTCTCAGGAAAAACTCACCTGACGTCGGACCCCACTACCCTGGCCTACAATATGTTTGATTGTGGCGACAGAGATGTGAGCGCTGCGCTGGTCTCTGTAACACTGCAGACCTCTCCCAGACAGGAGGAAGGTGGCCTTGGAAATGCCTTTCCATCTCCCTCGTCCTCTCAGGACGTGGACTACAGTGGCCAGTCACTTACTAAGTTTCCCTTAATGAGAAATAAATTAGACTGTGAAAATAACGCATCTGAATTGGGAGAATCTTTTCACAAAAGAAAAGAGAAATCTTCTAAAAACATTGAAAGCAGAAAGGTAAAAGGTAAGTGCCCAGAAGTACGTATGGGTGAAAAGCAAGAAGGCCATGAGTTCAAGAGCCAGTCGCAAAAAACTATGAAACCAAAACGCACCGACTGGCAGTTAGATATCAGACACATGCTGAAGTCCAGTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGACCGAAGTAAAAAGTTGGGGTGATTCTGCCCTTGCAAGCGACATGTACAGGAAAAGTAAAGGCACACAGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAACCGCCAGTGATGCGCCCCCTGGTGGCCCAACAACTAGAGCTTTCGCGGATGAAGAACTGCGAGGCAGGCTATCCGACAGTGAGTTCAGGATATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTCCACCTTGAAAGCGAG
Seq C2 exon
AGTGTCTCTGAGAATCTGCTAAACAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=0.755 C2=0.750
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000105482





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000020773, ENSMUSP00000120499, ENSMUSP00000122397
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr10:27339988-27341073 
ALTERNATIVE
HsaEX0004405
(ANKRD26)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr13:37432956-37433744 
Chicken
(galGal4)
chr1:24085844-24086818 
Chicken
(galGal3)
chr1:26112225-26113136 
ALTERNATIVE
GgaEX0027853
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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