MmuEX0005124 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5620078-5630795:+
Coord C1 exon
chr11:5620078-5620147
Coord A exon
chr11:5628327-5629406
Coord C2 exon
chr11:5630702-5630795
Length
1080 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTATGACTTCTAAGGAC
3' ss Score
6.53
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTTCGCCAAACCTGATGTTAGTGACCCAGAGCCCACAGCAAGAAAGGATGAATATAAGCTTGATACAAAG
Seq A exon
GACGAGGATAGGTTAGAGAGGCATCTTCTGGCACCCAAGGCGTCCCAGCATCAAGCCAAGCAGACGAGCCCTCCACCTGTACAACTTCAAGAAAGATCTCAGGGGCCAGAGATGGACACGGCTTCTGATGAGGAAGATACGTCTGGACTTTCAAAATCCGCTAAGGGCCAAATACTTGGGGGAAAGTTGACATTAGGAGAAAACCCGGAGGGTAAAGAAACTGTACAGTGTGTCATTAACAAGCCAACGCAGAAGGGTGACGAGATCTATGAAGATGTTAACGCTAATGTTTACCTCAAGGAAGAGCGACCACCTGATGTCTCAGGAAAAACTCACCTGACGTCGGACCCCACTACCCTGGCCTACAATATGTTTGATTGTGGCGACAGAGATGTGAGCGCTGCGCTGGTCTCTGTAACACTGCAGACCTCTCCCAGACAGGAGGAAGGTGGCCTTGGAAATGCCTTTCCATCTCCCTCGTCCTCTCAGGACGTGGACTACAGTGGCCAGTCACTTACTAAGTTTCCCTTAATGAGAAATAAATTAGACTGTGAAAATAACGCATCTGAATTGGGAGAATCTTTTCACAAAAGAAAAGAGAAATCTTCTAAAAACATTGAAAGCAGAAAGGTAAAAGGTAAGTGCCCAGAAGTACGTATGGGTGAAAAGCAAGAAGGCCATGAGTTCAAGAGCCAGTCGCAAAAAACTATGAAACCAAAACGCACCGACTGGCAGTTAGATATCAGACACATGCTGAAGTCCAGTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGACCGAAGTAAAAAGTTGGGGTGATTCTGCCCTTGCAAGCGACATGTACAGGAAAAGTAAAGGCACACAGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAACCGCCAGTGATGCGCCCCCTGGTGGCCCAACAACTAGAGCTTTCGCGGATGAAGAACTGCGAGGCAGGCTATCCGACAGTGAGTTCAGGATATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTCCACCTTGAAAGCGAG
Seq C2 exon
AGTGTCTCTGAGAATCTGCTAAACAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.782 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000109856fB5841
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types