RnoEX6043158 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85865485-85873669:+
Coord C1 exon
chr14:85865485-85865557
Coord A exon
chr14:85871060-85872148
Coord C2 exon
chr14:85873650-85873669
Length
1089 bp
Sequences
Splice sites
3' ss Seq
CATGCCCTATGATTTCTAAGGAC
3' ss Score
6.98
5' ss Seq
GAGGTAGTC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTTCTCCACCAACCCTGATATTAGTGACTCTGAGCCCACAACAAGAAAGGATGAATTTAAGTTGGATGCAAAG
Seq A exon
GACAAGGACGGGTTAGAGAAACATCCCCTGGCATCCAGAGCATCCCAGCATCAAGACAAGAAACTGAGCCTTCCACCTCCACAGCTCCAGGAAAGACCTCAGGAGACAGAGATGGACACTGCTTCTGATGAGGAAGATACATCTGGACTTTCAAAATCTGCTAAGGGTCAAATGCCTGGGAGAAAGTTGAGGGAAGGAGAGAAACTGGAGGGCAAACAAACTGCACAACATGTCATAAACAAGCCAACCCAGAAGGGTGGTGAGATCTATGAAGGTGTGAAAGCCAATGTTTACCACAAGGAAGAGCGACCGCCTGATGTCTCAGGAAAAGCTCACCTGAAGTCGGTCCCCACTAACCTGGCCTACAATACTCTTGATTGTGGCGACAGAGATGTGACTGCAGGGCTGTTCTCTGCGGCACTGCGGTCCTTTCCCAGACAGAAGGAAGGTGGCCTTGGAAATGCCTTTCCATCTCCCTCATCCTCATCCTCTCGGATCGTGGAATCCAGTGGCCATTCACTTACTAAGTTTTCCTTAATGAAAAATAAATTAGACTGTGAAAATAACACGTTTGAATTGGAAGAATCTTTTCATAAAAGAAAGGAGAAATCTTCTAAAAATGCTGAAAGTAGAAAGGTAAGAGGTAAATGCCCAGAAGTGCGTGCGGGTGAAAAGCAAGAAGGCCATGAGTTCAAGGGCCAGTTGCAAAAGTGTATGAAACCAAAACGCACAGACGGGCAGTTAGATATCGGACACATGCACAAGTCCAGTGATGCCAGCAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGAGCGAAATAAAAAGTTGGGGTGATTCTATCCTTCATGTAAGCGACATTTACGGGAAAAGTCAAGGCACACAGGACTTGTCCCCGAAGCCACTGCCCTGCAAAGGCAATTGCGAAGCCCCTGCATGCACCTTGGGACTCACCAGTGATGCGCCCCCTGGTGGCCGGACCGCAAGAGCTTTCGGGGCTGAAGAACTGCAGAACAGGCTCTCTGACAGCGAGTTCCGGATATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTACACCTTGAAAATGAG
Seq C2 exon
AGTGTCTCAGAGAATCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767-'21-28,'21-26,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.726 C2=0.380
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]