MmuEX0008828 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119288133-119294060:+
Coord C1 exon
chr6:119288133-119288195
Coord A exon
chr6:119293548-119293618
Coord C2 exon
chr6:119293985-119294060
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGTAGTTCCCCCCTCACAGATG
3' ss Score
8.07
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GATCTCGACTGCTTCGTCATAGACAACAATGGCTTCGTCCTGATCTCAGAGAGACCCCAAGAG
Seq A exon
ATGGGAAGACTTCTGGGGGAAGCGGATGGTGCTCTCATGAAGCAACTTCTCAGCATGGGGGTGTTCAGCCG
Seq C2 exon
TGTGACCATGTATGACTACCAGGCCATGTGCAAGCCCCCAGATCATCACCACAGTGCGGCCGAATCCCTGTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'28-29,'28-28,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGCTTCGTCATAGACAACA
R:
CTGAACAGGGATTCGGCCG
Band lengths:
133-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: