BtaEX6024852 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108736232-108737647:-
Coord C1 exon
chr5:108737585-108737647
Coord A exon
chr5:108736648-108736718
Coord C2 exon
chr5:108736232-108736307
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCTTGCCCTCTCAGGTG
3' ss Score
12.12
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GACCTGGACTGCTTTGTCGTCGACAACAATGGGTTCATCCTGATCTCTGAGAGGCCCCAGGAG
Seq A exon
GTGGGCCGATTCCTGGGGGAGGTAGACGGTGCGCTCGTGACCCAGCTGCTCAGCATGGGGGTGTTCAGCCA
Seq C2 exon
AGTGACCATGTACGACTACCAGGCCATGTGCAGACCCCCGACCCACCACCACAGCGCCTCCGAGCCCCTGGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACTGCTTTGTCGTC
R:
CTGACCAGGGGCTCGGAG
Band lengths:
138-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]