GgaEX6002701 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63120341-63123900:-
Coord C1 exon
chr1:63123838-63123900
Coord A exon
chr1:63121276-63121346
Coord C2 exon
chr1:63120341-63120416
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTGTGCTTGCAGATT
3' ss Score
11.08
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTCTGAATTGCTTTCTCATTGATAATAATGGCTTTATCCTCGTTTCCAAAAGACCTCCAGAG
Seq A exon
ATTGGAAAATTTCTTGGTGTGGTGGATGGCTCAGTAATGACCCAGCTACTGAACATGGGCATGTTCAGGCG
Seq C2 exon
GGTGACAATGTATGACTACCAAGCAATGTGCAAGGTGCCCTACCACCACCACAGTGGTGCCCGGCCGCTGCTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTTCTCATTGATAATAATGGCT
R:
CACTGTGGTGGTGGTAGGGC
Band lengths:
111-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]