MmuEX0008831 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119295062-119297269:+
Coord C1 exon
chr6:119295062-119295114
Coord A exon
chr6:119295448-119295468
Coord C2 exon
chr6:119297152-119297269
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCATGCCCTGAGCAGCCA
3' ss Score
2.67
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATTCCTGTTAGAGTGGAGTGCCTGGGGATCTTGGCAGGACAAAGGGTCAGAGG
Seq A exon
CCAAATCTGTCTTCCATCACT
Seq C2 exon
CCCACAAGCACAAGAAGCAGGACCTGCTGCACCCCTGTGACACAGAGTACCCAGTGTTCGTGCATCAGACGGCCATCCAGGAAGCCAATGGCATCATCGAGTGTGGGGGCTGCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGAGTGGAGTGCCTGGG
R:
GCACGAACACTGGGTACTCTG
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: