RnoEX0016158 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151404565-151406667:+
Coord C1 exon
chr4:151404565-151404617
Coord A exon
chr4:151404890-151404910
Coord C2 exon
chr4:151406550-151406667
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCATGCCCTGAGCAGCCA
3' ss Score
2.67
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATTCCTGTTCGAGTGGAGTGCTTGGGGATCTTGGCAGGACAAAGGGTCAGAGG
Seq A exon
CCAAAGCTGTCTTCCATCACT
Seq C2 exon
CCCACAAGCACAAGAAGCAAGACCTCCTGCACCCCTGTGACACAGAGTACCCAGTGTTCGTGCACCAGACGGCCATCCGGGAGGCCAACGGGATCATCGAGTGTGGGGGCTGCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTGCTTGGGGATCTTG
R:
GCACGAACACTGGGTACTCTG
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]