RnoINT0028206 @ rn6
Intron Retention
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151404565-151404910:+
Coord C1 exon
chr4:151404565-151404617
Coord A exon
chr4:151404618-151404889
Coord C2 exon
chr4:151404890-151404910
Length
272 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGGGCTCATGCCCTGAGCAGCCA
3' ss Score
2.67
Exon sequences
Seq C1 exon
ATTCCTGTTCGAGTGGAGTGCTTGGGGATCTTGGCAGGACAAAGGGTCAGAGG
Seq A exon
GTAAGTGCAAGGAGGCAGGTGTGGGCAGCGCTTTGGTAAGCTCGAGAGGTCAGTGACAGCGGGGTGGGTATCGAAGCATTCATGTTCATTCTCATCCATCACCTTCCCCTCACTCCGGGCTCCCTCACCTCTGTGTGTGACGTCACATCACCTCTGAACACCTTGGCTCCGTGTGACATCATCACTGCCCTGTGACATCATCTTGCCCTCATGTGACGCCGTGCTTTTCCCGTGCCATGTCCAACCCTGTGGTGGGCTCATGCCCTGAGCAG
Seq C2 exon
CCAAAGCTGTCTTCCATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031:ENSRNOT00000010746:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]