DreEX0018202 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18930600-18932254:-
Coord C1 exon
chr25:18932199-18932254
Coord A exon
chr25:18931454-18931474
Coord C2 exon
chr25:18930600-18930717
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTGATGGCTTGTAGCTA
3' ss Score
4.63
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTTATGTTGGAGTTCAACATCTGTGGACTTTGGCATAATGACTATGTGGTGGATG
Seq A exon
CTAAAGCTGGGTTTCATACAA
Seq C2 exon
CTCACAAGCAGAAAAAGGTGGAGCTGATGCAGCCGTGCAACACTGAGTATCCAGGTTTCATGTACGACAAGTCCATACGAGAGACAAACAGCATCATCAAATGTGGCCGCTGTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000027465fB1623
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGTTCAACATCTGTGGACT
R:
TGGATACTCAGTGTTGCACGG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]