MmuEX0008847 @ mm10
Exon Skipping
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52477692-52675811:-
Coord C1 exon
chr2:52675728-52675811
Coord A exon
chr2:52556202-52556361
Coord C2 exon
chr2:52477692-52477811
Length
160 bp
Sequences
Splice sites
3' ss Seq
AGTTTATTTGTTTTTATAAGGAA
3' ss Score
5.4
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGCCCGAGGCACCACGACCCGGAGGAGCAGGTTGAAAAGATCGGATGGCAGCACCACTTCTACCAGCTTCATCCTCAGACAG
Seq A exon
GAAGAATAATGTGATGTGTTACCCGAGATGGTGTGAACAGAGCTTCAAGCCAATGGAGACGACTAGGCCTAAATAGCTGAGCCGGTGGAGTGCCAGATAAAGCCACACCTGGAGTGCCACATCCCCAGCCGTCTCTCTCAGTGCCAATGCATTGATGGCT
Seq C2 exon
GGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCCTTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.973 A=0.500 C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGAGCAGGTTGAAAAGA
R:
CTTCGCTCTCTCAAGCTGGAT
Band lengths:
183-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types