RnoEX0016191 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:38000153-38090526:-
Coord C1 exon
chr3:38090229-38090526
Coord A exon
chr3:38088222-38088377
Coord C2 exon
chr3:38000153-38000272
Length
156 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTTTATAAGGAAGAAT
3' ss Score
-5.44
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCTGTATTGGAGAGGCAGATAAAAATGCCAGGTCTGCATGTCTCTGGGGATAACCTCGCCCTGTATGATGTAAATGAATAACATCTTGCCTGATAAAGCCACAGGAACTGATCAGGCAGCGCAGTTCTTCCAGAGAGGCCTTTTATGTTTTTTATTTTTTATTTTTTATTTTTTTTGAGCTCTAGCTGTGCTTTCTGCAGCAATTTTGTTTTTCTGCCTTAAAAAGAGGGGCTGTGGATCACCAGACCCCCATGTATGACAATTTGTACCTGCATGGAGTTGAAGACTCGGAGGCT
Seq A exon
AATAATGTGATGTGTTACCTGAGATGGTGTGAACAGAGCTTCAAGCCAATGGAGAAGACTAGGCCTAAATAGCTGAGCCGGTGGAGTGCCAGATAAAGCCACACCTGGAGTGCCACATCCCCAGCAGTCTCTCTCAGTGCCAATGCATTGATGGCT
Seq C2 exon
GGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCTTTGGAAGAGGACCGGGAAGCGATTCGGCAAGAGAGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666-'2-3,'2-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Inclusion Isoform:
ENSRNOT00000059430fB2246
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCAGTTCTTCCAGAGAG
R:
TTCCCGGTCCTCTTCCAAAGA
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]