MmuEX0012120 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113793050-113798211:+
Coord C1 exon
chr3:113793050-113793175
Coord A exon
chr3:113797435-113797551
Coord C2 exon
chr3:113798119-113798211
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTTTGCAACATAGTAT
3' ss Score
4.11
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGTGATATTCAGCAGTTCCTGATCACAGGAGACCCCAAGGCAGCATACGACTACTGTGACCATTACAGTCCAGATTGTGACTTAACATCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAG
Seq A exon
TATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGACTATAAAGAGGCTGAGAGTGTAACAGAGATGCCTACTTTTACTGAAGAAACAGTAGCACAAACAGAG
Seq C2 exon
GCAAATATTGTGGATGATTTTCAAGACTACAACTATGGAACAATGGAACCTTACCAGACTGAGACTCCTAGGCGGGTATCAGGATCGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.330 A=0.756 C2=0.895
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.1=23.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATATTCAGCAGTTCCTGA
R:
TCATTCGATCCTGATACCCGC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types